Preview

Medical Genetics

Advanced search

Analysis of CNVs in anembrionic pregnancy and missed abortions

https://doi.org/10.25557/2073-7998.2018.03.49-54

Abstract

Despite the high frequency of early pregnancy losses in human embryo development, copy number variations (CNVs), as one of the possible causes of miscarriage, are insufficiently explored. The present study is aimed to search for copy number variations (CNVs) in euploid anembryonic pregnancies and missed abortions. The 29 samples of extraembryonic tissues from anembryonic pregnancies and 18 samples of extraembryonic mesoderm from missed abortions were analysed using array comparative genomic hybridization (CGH) on high-resolution microarrays. Copy number variations were detected in both experimental groups but their total number in anembryonic pregnancies (299 CNVs) were significantly higher than in the group of missed abortions (132 CNVs). Several CNVs were selectively verified using real-time PCR. The predominance of microdeletions in anembryonic pregnancies is noteworthy. Nineteen (54.3%) potentially pathogenic microdeletions and 16 (45.7%) microduplications were found in anembryonic pregnancies while there were only microduplications in the group of observed missed abortions.

About the Authors

R. R. Savchenko
Research Institute of Medical Genetics, Tomsk NRMC
Russian Federation


A. A. Kashevarova
Research Institute of Medical Genetics, Tomsk NRMC
Russian Federation


N. A. Skryabin
Research Institute of Medical Genetics, Tomsk NRMC
Russian Federation


D. I. Zhigalina
National Research Tomsk State University
Russian Federation


M. E. Lopatkina
Research Institute of Medical Genetics, Tomsk NRMC
Russian Federation


T. V. Nikitina
Research Institute of Medical Genetics, Tomsk NRMC
Russian Federation


S. A. Vasilyev
Research Institute of Medical Genetics, Tomsk NRMC
Russian Federation


I. N. Lebedev
Research Institute of Medical Genetics, Tomsk NRMC
Russian Federation


References

1. Macklon NS, Geraedts JP, Fauser BC. Conception to ongoing pregnancy: the «black box» of early pregnancy loss. Hum. Reprod. Update. 2002;8(4):333-343.

2. Неразвивающаяся беременность. Методические рекомендации МАРС / В.Е. Радзинский. - М.: Редакция журнала StatusPraesens, 2015. - 48 c.

3. Лебедев ИН, Кашеварова АА, Скрябин НА и др. Матричная сравнительная геномная гибридизация (array-CGH) в диагностике хромомсомного дисбаланса и CNV-полиморфизма при анэмбрионии. Материалы II национального конгресса «Дискуссионные вопросы современного акушерства». 2013;LXII (2):117-125.

4. Griffin DK. The incidence, origin and etiology of aneuploidy. Int. Rev. Cytol. 1996;167:263-295.

5. Bassett AS, Chow EW, Husted J et al. Clinical features of 78 adults with 22q11 Deletion Syndrome. Am J Med Genet A. 2005;138(4):307-313.

6. Blackwood DH, Fordyce A, Walker MT. Schizophrenia and affective disorders-cosegregation with a translocation at chromosome 1q42 that directly disrupts brain-expressed genes: clinical and P300 findings in a family. Am J Med Genet A. 2001;69(2):428-433.

7. Glessner JT, Wang K, Cai J et al. Autism genome-wide copy number variation reveals ubiquitin and neuronal genes. Nature. 2009;459(7246):569-573.

8. Aitman TJ, Dong R, Vyse TJ et al. Copy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans. Nature. 2006;439(7078):851-855.

9. Schaeffer AJ, Chung J, Heretis K et al. Comparative genomic hybridization-array analysis enhances the detection of aneuploidies and submicroscopic imbalances in spontaneous miscarriages. Am. J. Hum. Genet. 2004;74:1168-1174.

10. Benkhalifa M, Kasakyan S, Clement P et al. Array comparative genomic hybridization profiling of first-trimester spontaneous abortions that fail to grow in vitro. Prenat. Diagn. 2005;25:94-900.

11. Shimokawa O, Harada N, Miyake N et al. Array comparative genomic hybridization analysis in first-trimester spontaneous abortions with «normal» karyotypes. Am. J. Hum. Genet. 2006;140:1931-1935.

12. Conrad DF, Andrews TD, Carter NP et al. A high-resolution survey of deletion polymorphism in the human genome. Nat. Genet. 2006;38(1):75-81.

13. Menten B, Swerts K, Delle Chiaie B. Array comparative genomic hybridization and flow cytometry analysis of spontaneous abortions and mors in utero samples. BMC Medical Genetics. 2009;10:89-94.

14. Rajcan-Separovic E, Diego-Alvarez D, Robinson WP et al. Identification of copy number variants in miscarriage from couples with idiopathic recurrent pregnancy loss. Hum. Reprod. 2010;25:2913-2922.

15. Rajcan-Separovic E, Qiao Y, Tyson C et al. Genomic changes detected by array CGH in human embryos with developmental defects. Hum. Reprod. 2010;16:125-134.

16. Robberecht С, Pexsters A, Deprest J et al. Cytogenetic and morphological analysis of early products of conception following hysteroembryoscopy from couples with recurrent pregnancy loss. Prenat. Diagn. 2012;4:1-10.

17. Database of genomic variants. URL: http://dgv.tcag.ca/dgv/app/home (дата обращения 15.01.2016)

18. Database of genomic variation and phenotype in humans using Ensembl Resources URL: https://decipher.sanger.ac.uk/ (дата обращения: 20.01.2016).

19. NCBI Gene. URL: http://www.ncbi.nlm.nih.gov/gene/ (дата обращения: 1.03.2016).

20. NCBI PubMed. URL: http://www.ncbi.nlm.nih.gov/pubmed/ (дата обращения: 1.03.2016).

21. Genome Browser University of California Santa Cruz. URL: https://genome.ucsc.edu/ (дата обращения 20.03.2016).

22. Genome browser Ensembl. URL: http://www.ensembl.org/index.html/ (дата обращения: 20.03.2016).

23. NCBI BLAST. URL: http://www.ncbi.nlm.nih.gov/tools/primer-blast/ (дата обращения: 20.03.2016).

24. Viaggi CD, Cavani S, Malacarne M et al. First-trimester euploid miscarriages analysed by array-CGH. J Appl Genetics. 2013;54(3):353-359.


Review

For citations:


Savchenko R.R., Kashevarova A.A., Skryabin N.A., Zhigalina D.I., Lopatkina M.E., Nikitina T.V., Vasilyev S.A., Lebedev I.N. Analysis of CNVs in anembrionic pregnancy and missed abortions. Medical Genetics. 2018;17(3):49-54. (In Russ.) https://doi.org/10.25557/2073-7998.2018.03.49-54

Views: 1794


Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.


ISSN 2073-7998 (Print)