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Study of a rare variant of the CFTR c.1329_1350del gene in a homozygous state in a child with cystic fibrosis using functional tests

https://doi.org/10.25557/2073-7998.2024.01.60-68

Abstract

   The study of rare variants in the CFTR gene is relevant in the era of targeted therapy with CFTR modulators. In this study, we studied the clinical picture of cystic fibrosis, as well as the function of the CFTR channel in a homozygous carrier of a rare pathogenic variant c.1329_1350del (p.Asp443GlufsX19), belonging to class I disorders in the CFTR gene. A complete correlation of the results of functional tests with the phenotypic pattern of CF and data of a sweat test was obtained. The method for determining the difference in intestinal potentials demonstrated the absence of functional activity of the chloride CFTR channel in the rectal biopsy, and when stimulated with forskolin, the patient’s organoids did not swell, which indicates a complete violation of the functional CFTR protein production. Exposure to intestinal organoids by all registered for therapy targeted drugs did not lead to their swelling, unlike the control culture, homozygous for F508del. The chloride channel of a patient with genotype p.Asp443GlufsX19/p.Asp443GlufsX19 turned out to be insensitive to any CFTR modulator.

About the Authors

E. I. Kondratyeva
Research Centre for Medical Genetics
Russian Federation

115522

1, Moskvorechye st.

Moscow



M. G. Krasnova
Research Centre for Medical Genetics
Russian Federation

115522

1, Moskvorechye st.

Moscow



Yu. L. Melyanovskaya
Research Centre for Medical Genetics
Russian Federation

115522

1, Moskvorechye st.

Moscow



V. D. Sherman
Research Centre for Medical Genetics
Russian Federation

115522

1, Moskvorechye st.

Moscow



D. O. Mokrousova
Research Centre for Medical Genetics
Russian Federation

115522

1, Moskvorechye st.

Moscow



A. S. Efremova
Research Centre for Medical Genetics
Russian Federation

115522

1, Moskvorechye st.

Moscow



N. V. Bulatenko
Research Centre for Medical Genetics
Russian Federation

115522

1, Moskvorechye st.

Moscow



T. B. Bukharova
Research Centre for Medical Genetics
Russian Federation

115522

1, Moskvorechye st.

Moscow



D. V. Goldshtein
Research Centre for Medical Genetics
Russian Federation

115522

1, Moskvorechye st.

Moscow



References

1. Egan M.E. Genetics of Cystic Fibrosis. Clin. Chest Med. 2016; 37; 9–16

2. Marson F.A.L., Bertuzzo C.S., Ribeiro J.D. Classification of CFTR mutation classes. Lancet Respir. Med. 2016; 4; e37–8

3. Pereira S.V.-N., Ribeiro J.D. Ribeiro A.F., et al. Novel, rare and common pathogenic variants in the CFTR gene screened by high-throughput sequencing technology and predicted by in silico tools. Sci. Rep. 2019; 9; 6234

4. Noordhoek J., Gulmans V., Van Der Ent K., et al. Intestinal organoids and personalized medicine in cystic fibrosis: A successful patient-oriented research collaboration. Curr. Opin. Pulm. Med. 2016; 22; 610–6

5. Boj S.F., Vonk A.M., Statia M., et al. Forskolin-induced swelling in intestinal organoids: An in vitro assay for assessing drug response in cystic fibrosis patients. J. Vis. Exp. 2017; 2017; 1–12

6. Muilwijk D., de Poel E., van Mourik P., et al. Forskolin-induced organoid swelling is associated with long-term cystic fibrosis disease progression. Eur. Respir. J. 2022; 60

7. Registr patsiyentov s mukovistsidozom v Rossiyskoy Federatsii. 2020 god. Pod redaktsiyey Ye.I. Kondrat’yevoy, S.A. Krasovskogo, M.A. Starinovoy, A.Yu. Voronkovoy, Ye.L. Amelinoy, N.Yu. Kashirskoy, S.N. Avdeyeva, S.I. Kutseva [Register of patients with cystic fibrosis in the Russian Federation. 2020 Edited by E.I. Kondratyeva, S.A. Krasovsky, M.A. Starinova, A.Yu. Voronkova, E.L. Amelina, N.Yu. Kashirskaya, S.N. Avdeev, S.I. Kutsev]. ID «Medpraktika-M» [Publishing House “Medpraktika-M”]. 2022 ; 68 p. (In Russ.)

8. Castellani C., Duff A.J.A., Bell S.C., et al. ECFS best practice guidelines: the 2018 revision. J. Cyst. Fibros. 2018; 17; 153–78

9. Klinicheskiye rekomendatsii. Kistoznyy Fibroz (Mukovistsidoz). 2021 [Clinical recommendations. Cystic Fibrosis (Cystic Fibrosis). 2021] https://cr.minzdrav.gov.ru/schema/372_2 (In Russ.)

10. Dekkers J.F., van der Ent C.K., Beekman J.M. Novel opportunities for CFTR-targeting drug development using organoids. Rare Dis. 2013; 1; 1–6

11. Vonk A.M., van Mourik P., Ramalho A.S., et al. Protocol for Application, Standardization and Validation of the Forskolin-Induced Swelling Assay in Cystic Fibrosis Human Colon Organoids. STAR Protoc. 2020; 1; 1–31

12. Dekkers J.F., Berkers G., Kruisselbrink E., et al. Characterizing responses to CFTR-modulating drugs using rectal organoids derived from subjects with cystic fibrosis. Sci. Transl. Med. 2016; 8

13. Ramalho A.S., Förstová E., Vonk A.M., et al. Correction of CFTR function in intestinal organoids to guide treatment of cystic fibrosis. Eur. Respir. J. 2021; 57

14. Melyanovskaya J.L., Kondratieva E.I., Kutsev S.I. Determination of reference values for the method of intestinal current measurement in the Russian Federation. Med. News North Caucasus 2020; 15

15. Guimbellot J., Sharma J., Rowe S.M. Toward inclusive therapy with CFTR modulators: Progress and challenges. Pediatr. Pulmonol. 2017; 52; S4–14

16. Derichs N., Sanz J., Von Kanel T., et al. Intestinal current measurement for diagnostic classification of patients with questionable cystic fibrosis: Validation and reference data. Thorax 2010; 65; 594–9

17. Clancy J.P., Szczesniak R.D., Ashlock M.A., et al. Multicenter Intestinal Current Measurements in Rectal Biopsies from CF and Non-CF Subjects to Monitor CFTR Function. PLoS One 2013; 8; 1–13

18. Kondratyeva E., Melyanovskaya Y., Efremova A., et al. Clinical and Genetic Characteristics of a Patient with Cystic Fibrosis with a Complex Allele [E217G;G509D] and Functional Evaluation of the CFTR Channel. Genes (Basel). 2023; 14; 1705

19. Kondratyeva E., Melyanovskaya Y., Bulatenko N., et al. Clinical and Functional Characteristics of the E92K CFTR Gene Variant in the Russian and Turkish Population of People with Cystic Fibrosis. Int. J. Mol. Sci. 2023; 24; 6351

20. Kondratyeva E., Bulatenko N. Melyanovskaya Y., et al. Personalized Selection of a CFTR Modulator for a Patient with a Complex Allele [L467F;F508del]. Curr. Issues Mol. Biol. 2022; 44; 5126–38

21. Kondratyeva E., Bukharova T., Efremova A., et al. Health characteristics of patients with cystic fibrosis whose genotype includes a variant of the nucleotide sequence c.3140-16T>A and functional analysis of this variant. Genes (Basel). 2021; 12


Review

For citations:


Kondratyeva E.I., Krasnova M.G., Melyanovskaya Yu.L., Sherman V.D., Mokrousova D.O., Efremova A.S., Bulatenko N.V., Bukharova T.B., Goldshtein D.V. Study of a rare variant of the CFTR c.1329_1350del gene in a homozygous state in a child with cystic fibrosis using functional tests. Medical Genetics. 2024;23(1):60-68. (In Russ.) https://doi.org/10.25557/2073-7998.2024.01.60-68

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